Björn Canbäck Bioinformatics

Test results for ARWEN and tRNAscan-SE

Note: Since this evaluation was made, the selectivity of ARWEN has slightly improved. Therefore, the results presented here will not perfectly correspond to that of the publication.

23 mitochondrial genomes from Metazoa were randomly chosen by using stratified selection to allow representatives from distant lineages with few members:

Lineage	Completed genomes	Selected genomes
Placozoa	1	1
Porifera	3	1
Cnidaria	21	2
Acoelomata	13	2
Pseudocoelomata	17	2
Mollusca	29	1
Arthropoda, Chelicerata	21	1
Arthorpoda, Crustacea	30	1
Arthorpoda, Hexapoda	61	1
Other Protostomia	13	0
Echinodermata	16	1
Chordata, Hemichordata, Deuterostomia	632	10
Total	857	23

ARWEN was run with the option -gcmet (composite metazoan mitochondrial genetic code) with the exception of the two mammalian genomes (Semnopithecus entellys and Elephas maimus) where the options -gcmam (mammalian mitochondrial genetic code) and -mtmam (search for mammalian mitochondrial tRNA genes) were used. tRNAscan-SE (version 1.23) was run with the option -O (search for organellar tRNAs) and the appropriate genetic code. Note that some (false?) introns were reported when using tRNAscan-SE (see for example in the lower section of the Ancylostoma duodenale table.

Color key:
"True" tRNA according to RefSeq annotations. Denoted by numbers.
False positive according to RefSeq annotations. Denoted by letters
tRNA start or stop positioned in protein encoding gene (intragenic)
tRNA start or stop positioned between protein encoding genes (intergenic)

---

Quick links to organisms:

Acanthaster planci
Ancylostoma duodenale
Arenaria interpres
Artemia franciscana
Ascaris suum
Axinella corrugata
Briareum asbestinum
Chauliodus sloani
Coreoleuciscus splendidus
Cottus reinii
Crassostrea virginica
Dallia pectoralis
Echinococcus multilocularis
Elephas maximus
Heterodoxus macropus
Leptotrombidium pallidum
Onychodactylus fischeri
Porichthys myriaster
Ricordea florida
Saccopharynx lavenbergi
Schistosoma mansoni
Semnopithecus entellus
Trichoplax adhaerens

---

Test results for Acanthaster planci
NCBI translation table: 9   RefSeq status: Reviewed
Link to publication    Link to GenBank entry

Method described in publication: Direct comparison with the genome of a closely related organism.

nr	tRNAscan-SE		tRNAscan-SE		RefSeq annotation
1	2620	2693	2621	2692	2621	2692
2	3672	3745	3673	3744	3673	3744
3	3773	3841	3773	3841	3773	3841
4	3842	3913	3843	3912	3843	3912
5	3912	3984	3913	3983	3913	3983
6	3983	4056	3985	4055	3985	4055
7	4067	4134	4067	4134	4067	4134
8	4135	4201	4135	4201	4135	4201
9	4202	4271	4202	4271	4202	4271
10	4277	4345	4277	4345	4277	4345
11	4346	4417	4346	4417	4346	4417
12	4418	4489	4418	4489	4418	4489
13	4492	4563	4492	4563	4492	4563
14	4563	4634	4564	4634	4564	4634
a	4886	4952
15	6217	6287	6218	6286	6218	6286
16	7271	7344			7272	7343
17	8973	9043	8973	9043	8973	9043
18	10822	10891	10822	10890	10822	10890
19	10891	10960			10891	10959
b	14385	14455
20	14553	14627	14554	14624	14554	14624
21	15553	15624	15554	15622	15554	15622
22	15631	15702	15631	15702	15630	15703

---

Test results for Ancylostoma duodenale
NCBI translation table: 5   RefSeq status: Reviewed
Link to publication    Link to GenBank entry

Method described in publication: tRNAs were identified with the aid of tRNAscan-SE and then unidentified tRNAs by secondary structure.

nr	ARWEN		tRNAscan-SE		RefSeq annotation
1	1	54			1	54
2	54	125	55	124	55	109
3	797	854	797	990	797	854
4	855	911			855	911
a	1596	1648
5	1609	1662			1609	1662
6	1661	1721			1663	1720
7	1721	1776	1721	1795	1721	1776
b	2525	2576
8	3249	3310	3249	3310	3249	3310
9	3321	3375			3321	3375
10	3376	3427			3376	3427
c	4050	4115
11	4287	4345			4287	4345
12	4364	4417			4364	4417
13	4429	4485			4430	4484
14	4491	4547			4491	4547
15	5659	5722			5660	5715
16	6481	6538	6482	6548	6482	6537
17	9453	9508			9454	9507
18	9517	9577			9518	9576
19	9581	9637			9582	9636
20	9639	9694	9639	9762	9639	9694
21	10393	10446			10393	10446
d			13348	13594
22	13399	13454	13399	13608	13399	13453
e	13583	13637

---

Test results for Arenaria interpres
NCBI translation table: 2   RefSeq status: Reviewed
Link to publication    Link to GenBank entry

Method described in publication: Not described

nr	ARWEN		tRNAscan-SE		RefSeq annotation
1	1172	1244	1173	1243	1173	1243
2	2214	2284	2214	2284	2214	2284
a	3292	3349
3	3880	3954	3880	3953	3880	3953
b	4042	4095
4	4945	5018	4946	5017	4948	5017
5	5026	5096	5026	5096	5026	5096
6	5095	5165	5096	5164	5096	5164
7	6204	6277	6204	6276	6204	6276
8	6278	6346	6278	6346	6278	6346
9	6350	6422	6350	6422	6350	6422
10	6425	6491	6425	6491	6425	6491
11	6491	6561	6491	6561	6491	6561
12	8105	8178	8105	8178	8099	8178
13	8181	8250	8181	8249	8181	8249
c	8562	8620
14	8936	9007	8936	9006	8936	9006
15	10632	10702	10633	10701	10633	10701
16	11058	11126	11058	11126	11058	11127
17	12796	12864	12796	12864	12796	12864
18	12866	12932			12866	12930
19	12930	13002	12931	13001	12931	13001
20	15974	16043	15974	16043	15974	16050
21	16050	16121	16051	16120	16051	16120
22	16654	16724	16654	16724	16654	16725

---

Test results for Artemia franciscana
NCBI translation table: 5   RefSeq status: Reviewed
Link to publication    Link to GenBank entry

Method described in publication: Direct comparison with the genome of a closely related organism.

nr	ARWEN		tRNAscan-SE		RefSeq annotation
1	15822	64	1	63	1	63
2	952	1016	953	1015	953	1015
3	1032	1096			1033	1095
4	1104	1169			1104	1169
5	1208	1268	1208	1268	1208	1268
6	1281	1342			1281	1342
7	2877	2941			2878	2940
8	3623	3686			3623	3686
9	3690	3751			3690	3751
10	5341	5401			5341	5401
11	5768	5827			5767	5828
a	5789	5858
12	5828	5893			5829	5892
13	5893	5955			5893	5955
14	5954	6022			5956	6020
15	6021	6087	6022	6086	6022	6087
16	6084	6147	6085	6146	6085	6146
17	7768	7831	7769	7830	7769	7830
18	9277	9338	9277	9338	9277	9338
19	9338	9400	9339	9399	9339	9399
20	11028	11096	11029	11095	11029	11095
21	12009	12073	12011	12072	12011	12072
22	13226	13290			13226	13288
b	15069	15129
c	15499	15563

---

Test results for Ascaris suum
NCBI translation table: 5   RefSeq status: Provisional
Link to publication    Link to GenBank entry

Method described in publication: tRNAs were identified by eye, from their ability to fold into specific, consensus secondary structures.

nr	ARWEN		tRNAscan-SE		RefSeq annotation
1	1	56			1	56
2	56	114			57	113
3	785	841			785	841
4	842	900			842	900
5	1618	1671			1618	1671
a			2049	2125
6	2558	2614			2558	2614
7	2625	2682			2625	2682
8	4168	4231	4169	4230	4169	4230
9	4236	4290			4236	4290
10	4291	4341			4291	4341
11	5185	5247			5186	5246
12	5246	5301			5247	5300
13	5304	5358			5304	5358
14	5374	5432			5374	5432
15	6545	6600			6545	6600
16	7368	7424			7369	7423
b	8627	8684
17	10347	10406			10348	10405
18	10410	10470			10410	10470
19	10471	10530			10471	10530
20	10534	10591			10535	10590
21	11290	11346			11291	11345
c	12252	12310
22	14226	14283			14227	14282

---

Test results for Axinella corrugata
NCBI translation table: 4   RefSeq status: Reviewed
Link to publication    Link to GenBank entry

Method described in publication: tRNAs were identified with the aid of tRNAscan-SE

nr	ARWEN		tRNAscan-SE		RefSeq annotation
a	500	565
b	1286	1358
c	1621	1686
d	1941	2015
e	3496	3572
1	4654	4726	4654	4725	4654	4725
2	4830	4901	4830	4901	4830	4901
3	5035	5107	5035	5106	5035	5106
4	6560	6634	6560	6632	6560	6632
f	7496	7560
5	7666	7737	7666	7737	7666	7737
6	7933	8003	7933	8003	7933	8003
7	9372	9447	9372	9444	9372	9444
8	9700	9772	9700	9772	9700	9772
9	10245	10334	10246	10333	10246	10333
10	10514	10588	10515	10587	10515	10587
g	10548	10618
11	10611	10693	10611	10693	10611	10693
h	12386	12461
12	12566	12638	12566	12638	12566	12638
13	12659	12730	12659	12730	12659	12730
14	14046	14118	14047	14117	14047	14117
15	14478	14551	14478	14551	14478	14551
i	14885	14946
j	15311	15374
16	17069	17140	17069	17140	17069	17140
17	17196	17269	17196	17268	17196	17268
18	17423	17501	17423	17501	17423	17501
19	18914	18988	18915	18987	18915	18987
20	19054	19125	19054	19125	19054	19125
21	19189	19259	19189	19259	19189	19259
k	19639	19695
l	22847	22916
22	23363	23435	23363	23435	23363	23435
23	23691	23765	23692	23764	23692	23764
m	23869	23935
24	25275	25347	25275	25346	25275	25346
25	25537	1	25538	25610	25538	25610

---

Test results for Briareum asbestinum
NCBI translation table: 4   RefSeq status: Reviewed
Link to publication    Link to GenBank entry

Method described in publication: Not described

nr	ARWEN		tRNAscan-SE		RefSeq annotation
a	1186	1238
b	9250	9309
c	12018	12089
d	12771	12837
1	15828	15896	15827	15897	15827	15897
e	16170	16218
f	18191	18264

---

Test results for Chauliodus sloani
NCBI translation table: 2   RefSeq status: Reviewed
Link to publication    Link to GenBank entry

Method described in publication: Not described

nr	ARWEN		tRNAscan-SE		RefSeq annotation
1	17814	73	1	69	1	69
a	79	142
2	1083	1154	1083	1154	1083	1154
b	2473	2530
c	2554	2624
d	2663	2723
3	3153	3226	3153	3226	3153	3226
4	4270	4345	4272	4343	4272	4343
5	4344	4414	4344	4414	4344	4414
6	4423	4493	4424	4492	4424	4492
7	5538	5606	5538	5606	5538	5606
8	5606	5675	5607	5675	5607	5675
9	5675	5749	5676	5748	5676	5748
10	5760	5829	5760	5829	5760	5829
11	5935	6003	5938	6002	5938	6002
e	6141	6203
f	6343	6405
g	6539	6607	6542	6606
h	6739	6807	6742	6806
12	8654	8722	8653	8723	8653	8723
13	8757	8827	8758	8826	8758	8826
i	9504	9554
14	9531	9604	9531	9604	9531	9604
j	11268	11339	11268	11338
k	11349	11416
15	11442	11513	11442	11513	11442	11513
26	11961	12030	11961	12030	11961	12030
l	13003	13060
17	13799	13865	13799	13865	13799	13865
18	13866	13935			13866	13935
19	13948	14021	13949	14020	13949	14020
20	16375	16443	16375	16443	16375	16443
21	17588	17661	17588	17666	17588	17660
22	17673	17744	17674	17743	17674	17743

---

Test results for Coreoleuciscus splendidus
NCBI translation table: 2   RefSeq status: Reviewed
Link to publication    Link to GenBank entry

Method described in publication: Not published

nr	ARWEN		tRNAscan-SE		RefSeq annotation
1	1	70	1	69	1	69
a	994	1066
2	1028	1099	1028	1099	1028	1099
b	2718	2802
3	2792	2869	2793	2868	2793	2869
4	3848	3921	3849	3920	3849	3921
5	3918	3990	3919	3989	3920	3990
6	3991	4059	3991	4059	3991	4059
7	5105	5175	5105	5175	5106	5175
8	5175	5246	5177	5245	5178	5246
9	5247	5319	5247	5319	5248	5320
10	5353	5421	5353	5420	5352	5420
11	5421	5491	5421	5491	5422	5492
12	7045	7113	7044	7114	7044	7114
13	7118	7189	7118	7189	7118	7189
c	7150	7209
14	7893	7970	7894	7969	7894	7969
15	9597	9668	9597	9668	9597	9668
16	10021	10091	10021	10091	10018	10091
17	11763	11831	11763	11831	11763	11831
d	11854	11920
18					11832	11900
19	11901	11975	11902	11974	11902	11974
20	14329	14397	14329	14397	14329	14397
21	15541	15612	15541	15612	15541	15612
22	15611	15682	15612	15681	15611	15682

---

Test results for Cottus reinii
NCBI translation table: 2   RefSeq status: Reviewed
Link to publication    Link to GenBank entry

Method described in publication: Not described

nr	ARWEN		tRNAscan-SE		RefSeq annotation
1	1	69	1	68	1	68
2	1014	1086	1014	1085	1014	1085
3	2774	2847	2774	2847	2774	2847
4	3827	3896	3827	3896	3827	3896
5	3896	3966	3896	3966	3896	3966
6	3965	4035	3966	4034	3966	4034
7	5081	5151	5081	5151	5081	5151
8	5153	5221	5153	5221	5153	5221
9	5223	5295	5223	5295	5223	5291
10	5330	5399			5333	5398
11	5399	5468	5399	5468	5399	5468
12	7022	7090	7021	7091	7021	7091
13	7094	7170	7095	7167	7095	7167
14	7882	7956	7882	7955	7882	7955
15	9583	9654	9583	9654	9583	9654
16	10003	10073	10004	10072	10004	10072
17	11744	11812	11744	11812	11744	11812
18	11812	11881			11813	11880
19	11885	11957	11885	11957	11885	11957
20	14315	14382	14315	14382	14315	14382
21	15528	15599	15528	15599	15528	15599
22	15637	15707	15637	15707	15637	15707

---

Test results for Crassostrea virginica
NCBI translation table: 5   RefSeq status: Reviewed
Link to publication    Link to GenBank entry

Method described in publication: tRNAs were identified with the aid of tRNAscan-SE and DOGMA.

nr	ARWEN		tRNAscan-SE		RefSeq annotation
a	1139	1193
1	3430	3496			3430	3495
2	3499	3567	3499	3567	3499	3567
3	3577	3647	3578	3646	3578	3646
4	5673	5743			5673	5743
5	5750	5819	5751	5817	5751	5817
6	5876	5944	5876	5944	5876	5944
7	6776	6842	6777	6841	6777	6841
8	7831	7894	7831	7894	7831	7894
9	7924	7990	7924	7990	7924	7990
10	8007	8074	8007	8073	8007	8073
11	8096	8161	8096	8160	8096	8160
12	8176	8250	8178	8248	8178	8248
13	9031	9096	9032	9097	9031	9097
14	9180	9253			9180	9253
15	9444	9513			9438	9512
16	11337	11402	11337	11402	11337	11402
17	11448	11512	11448	11512	11448	11512
b	12469	12529
c	12696	12755
18	12918	12988	12918	12987	12918	12987
d	13059	13122
e	13410	13475
19	15277	15345	15277	15345	15277	15345
20	15724	15796	15725	15795	15725	15795
21	15803	15869	15803	15868	15803	15868
22	15891	15956			15891	15956
23	17176	17243	17176	17242	17176	17242

---

Test results for Dallia pectoralis
NCBI translation table: 2   RefSeq status: Reviewed
Link to publication    Link to GenBank entry

Method described in publication: Not described

nr	ARWEN		tRNAscan-SE		RefSeq annotation
1	1	69	1	68	1	68
2	1007	1080	1008	1078	1008	1078
3	2739	2813	2739	2813	2739	2813
4	3792	3863	3792	3863	3792	3863
5	3860	3932	3861	3931	3861	3931
6	3930	4000	3931	3999	3931	3999
7	5050	5121	5051	5120	5051	5120
8	5122	5190	5122	5190	5122	5190
9	5192	5264	5192	5264	5192	5264
10	5293	5362	5296	5361	5296	5361
11	5362	5432	5362	5432	5362	5432
12	6986	7054	6985	7055	6985	7055
13	7060	7135	7061	7134	7061	7134
14	7829	7903	7829	7902	7829	7902
15	9529	9600	9529	9600	9529	9600
16	9950	10019	9950	10019	9950	10019
17	11691	11758	11691	11758	11691	11758
18	11759	11829			11759	11827
19	11830	11902	11830	11902	11830	11902
20	14259	14331	14260	14330	14260	14330
21	15524	15593	15524	15593	15524	15593
22	16785	16855	16785	16855	16785	16855

---

Test results for Echinococcus multilocularis
NCBI translation table: 9   RefSeq status: Reviewed
Link to publication    Link to GenBank entry

Method described in publication: tRNAs were identified with the aid of tRNAscan-SE and then unidentified tRNAs by eye.

nr	ARWEN		tRNAscan-SE		RefSeq annotation
1	1	66			1	66
a	112	176
2	250	322			250	322
3	361	416			360	417
4	431	494			431	494
5	513	566			510	567
b	2258	2327
6	2321	2388			2321	2388
7	3040	3109			3041	3108
8	5676	5736			5676	5736
9	5736	5798			5736	5798
10	5795	5859			5795	5859
11	7292	7356			7293	7355
12	7361	7424			7361	7424
13	7425	7487			7425	7487
14	8402	8467	8402	8467	8402	8467
15	8474	8536			8474	8536
16	8536	8599			8537	8598
17	8605	8670			8605	8670
18	9030	9088			9030	9088
19	9097	9161			9097	9161
20	10767	10831	10767	10831	10767	10831
21	11817	11878			11815	11878
22	13201	13268			13201	13268

---

Test results for Elephas maximus
NCBI translation table: 2   RefSeq status: Reviewed
Link to publication    Link to GenBank entry

Method described in publication: Not described

nr	ARWEN		tRNAscan-SE		RefSeq annotation
1	1	69	1	69	1	69
2	1031	1101	1032	1099	1032	1099
3	2664	2740	2665	2739	2665	2739
4	3694	3764	3695	3763	3695	3763
5	3761	3832	3761	3832	3760	3831
6	3834	3905	3835	3904	3835	3904
7	4947	5014	4947	5014	4947	5014
8	5018	5086	5018	5086	5018	5086
9	5087	5160	5087	5160	5087	5160
10	5197	5263	5198	5263	5198	5263
11	5264	5327	5264	5327	5264	5327
12	6872	6939	6872	6939	6872	6940
13	6950	7018	6950	7018	6950	7018
14	7703	7772	7704	7771	7704	7771
15	9384	9455	9385	9454	9385	9454
16	9802	9868	9802	9868	9802	9868
a	10043	10100
17	11539	11607	11539	11607	11539	11607
18	11608	11666			11608	11666
19	11667	11736	11667	11736	11667	11736
20	14069	14139	14070	14138	14070	14138
21	15284	15349	15284	15349	15284	15349
22	15351	15418	15351	15418	15351	15418

---

Test results for Heterodoxus macropus
NCBI translation table: 5   RefSeq status: Reviewed
Link to publication    Link to GenBank entry

Method described in publication: tRNAs were identified with the aid of tRNAscan-SE and then unidentified tRNAs by secondary structure.

nr	ARWEN		tRNAscan-SE		RefSeq annotation
1	14670	68	1	67	1	67
2	71	132			70	133
a	101	160
b	382	442
3	752	822	753	821	753	821
4	825	892	826	891	826	891
c	1874	1935
5	2458	2522			2459	2521
6	2521	2588	2522	2587	2522	2587
7	2591	2656			2591	2656
8	2663	2726	2663	2726	2663	2726
9	2747	2810	2747	2810	2747	2810
10	2818	2882			2818	2882
11	3709	3773	3709	3773	3709	3773
d	4644	4718
12	5809	5878	5810	5877	5810	5877
e	6290	6341
f	7600	7662
g	7923	7988
h	7960	8034
i	8100	8176
13	8404	8467	8404	8467	8404	8467
14	8470	8540	8471	8539	8471	8539
j	8871	8941
k	10075	10148
15	10220	10283	10220	10283	10220	10283
16	10288	10352	10288	10352	10288	10352
17	10348	10413	10349	10412	10349	10412
18	10418	10482	10418	10482	10418	10482
l	10771	10842
19	11545	11611	11545	11611	11545	11611
20	11614	11683	11614	11682	11614	11682
21	11687	11752	11688	11752	11688	11752
22	11755	11819			11756	11818
n	12379	12462
m			12485	12731
o	13720	13777
p	14228	14290

---

Test results for Leptotrombidium pallidum
NCBI translation table: 5   RefSeq status: Reviewed
Link to publication    Link to GenBank entry

Method described in publication: tRNAs were identified with the aid of tRNAscan-SE and then unidentified tRNAs by eye.

nr	ARWEN		tRNAscan-SE		RefSeq annotation
1	1	61			1	61
2	943	996			944	995
3	3178	3236			3179	3235
4	3220	3299			3245	3298
5	3554	3607			3554	3607
6	3610	3662			3609	3663
7	3668	3727			3668	3727
8	4607	4656			4607	4655
a	6239	6321
9	6998	7052			6999	7051
10	7536	7587			7535	7588
b	7555	7611
11	7586	7639			7587	7638
12	8870	8916			8864	8919
13	8917	8966			8917	8966
14	10453	10506			10455	10505
15	10505	10564			10506	10563
c	10533	10590
d	10656	10725
e	11280	11332
16	12104	12160			12103	12159
17	12160	12209			12160	12209
18	12203	12263			12210	12259
f	13057	13139
19	14733	14791			14735	14790
20	16322	16377			16324	16377
21	16378	16426			16379	16425
g	16703	4

---

Test results for Onychodactylus fischeri
NCBI translation table: 2   RefSeq status: Reviewed
Link to publication    Link to GenBank entry

Method described in publication: Not described

nr	ARWEN		tRNAscan-SE		RefSeq annotation
1	1	69	1	69	1	69
2	998	1068	999	1067	999	1067
a	1256	1316
3	2645	2721	2646	2720	2643	2717
4	3691	3763	3692	3762	3692	3762
5	3762	3833	3762	3833	3761	3834
6	3834	3902	3835	3901	3835	3901
7	4942	5010	4942	5010	4942	5010
8	5016	5084	5016	5084	5016	5084
9	5086	5158	5086	5158	5086	5158
10	5191	5257	5192	5257	5192	5257
11	5258	5326	5258	5326	5258	5326
12	6881	6951	6881	6951	6881	6951
13	6953	7023	6954	7021	6954	7021
14	7711	7783	7712	7782	7712	7782
15	9408	9477	9409	9476	9409	9476
16	9826	9894	9826	9894	9828	9892
17	11563	11631	11563	11631	11563	11631
18	11632	11699			11623	11690
19	11700	11771	11700	11771	11691	11762
b	14074	14126
20	14090	14159	14091	14158	14091	14158
21	15299	15369	15300	15368	15300	15368
22	15595	15667	15596	15666	15596	15666

---

Test results for Porichthys myriaster
NCBI translation table: 2   RefSeq status: Reviewed
Link to publication    Link to GenBank entry

Method described in publication: Not described

nr	ARWEN		tRNAscan-SE		RefSeq annotation
1	914	980	914	980	914	980
2	2568	2638	2568	2638	2568	2638
3	3591	3659	3591	3659	3591	3659
4	3659	3733	3660	3732	3660	3732
5	3778	3846	3778	3846	3778	3846
6	3847	3914	3847	3914	3847	3914
7	6326	6391	6326	6391	6326	6391
8					6798	6856
9	6858	6925			6858	6925
a	9699	9756
10	9859	9928	9859	9928	9859	9928
11	9930	10002	9930	10000	9930	10000
12	10007	10072	10007	10072	10007	10072
13	12667	12737	12667	12737	12667	12737
b	12777	12831
14	12795	12864	12796	12863	12796	12863
15	12876	12940	12876	12940	12876	12940
16	12942	13011	12943	13010	12943	13010
17	13008	13079	13009	13078	13009	13078
18	13077	13147	13078	13146	13078	13146
19	14187	14252			14188	14251
20	14256	14323	14256	14323	14256	14323
21	15911	15980	15911	15991	15911	15979
22	16529	16597	16529	16597	16529	16597
c	18701	18758

---

Test results for Ricordea florida
NCBI translation table: 4   RefSeq status: Reviewed
Link to publication    Link to GenBank entry

Method described in publication: Not described

nr	ARWEN		tRNAscan-SE		RefSeq annotation
a	1067	1118
b	6766	6827
1	13256	13325	13256	13325	13256	13325
2	14770	14842	14771	14841	14771	14841
c	16163	16215
d	16379	16439

---

Test results for Saccopharynx lavenbergi
NCBI translation table: 2   RefSeq status: Reviewed
Link to publication    Link to GenBank entry

Method described in publication: tRNAS were identified by looking at cloverleaf secondary structures and anticodon sequences.

nr	ARWEN		tRNAscan-SE		RefSeq annotation
1	1	69	1	69	1	69
2	1008	1076	1008	1076	1008	1076
a	2429	2502
3	2769	2842	2767	2843	2769	2841
b	3362	3420
4	3821	3891	3821	3891	3821	3891
5	3904	3974	3904	3974	3904	3974
6	5724	5792	5724	5792	5724	5792
7	6173	6245	6173	6245	6173	6245
8	9238	9307	9238	9307	9238	9307
9	9314	9385	9315	9384	9314	9385
c	9398	9458
d	10258	10306
10	10377	10450	10377	10449	10377	10449
11	10466	10534			10466	10534
12	11596	11664	11596	11664	11596	11664
13	11668	11738	11668	11738	11668	11738
14	11757	11825	11758	11824	11758	11824
15	11825	11895	11825	11895	11825	11895
16	13603	13671	13603	13671	13603	13671
17	13673	13745	13674	13744	13674	13744
18	14440	14509	14440	14509	14440	14509
19	14524	14593	14524	14593	14524	14593
20	16267	16334	16267	16334	16267	16334
21	16334	16404			16335	16403
22	16416	16484	16416	16484	16416	16484
e	16812	16877
f	17330	17399
g	17649	17733

---

Test results for Schistosoma mansoni
NCBI translation table: 9   RefSeq status: Reviewed
Link to publication    Link to GenBank entry

Method described in publication: Not described

nr	ARWEN		tRNAscan-SE		RefSeq annotation
1	3	53			1	68
2	72	143	73	142	73	142
3	367	436			367	436
4	468	539			468	539
5	539	605			540	604
6	2491	2554			2491	2564
a	3201	3265
7					3620	3679
8	3625	3686			3626	3685
9	5507	5571			5507	5571
10	5582	5646			5582	5646
11	5690	5752			5691	5750
12	5768	5841	5768	5841	5768	5841
13	5870	5934			5870	5931
14	5953	6017	5953	6017	5953	6017
15	7441	7507	7441	7507	7441	7507
16	7515	7587			7515	7587
17	7598	7663			7597	7664
18	9333	9401	9333	9401	9333	9401
19	10096	10168	10097	10167	10097	10167
20	10171	10243			10172	10242
21	12891	12953			12891	12953
22	12978	13049	12979	13048	12979	13048
23	13447	13520	13447	13520	13447	13520

---

Test results for Semnopithecus entellus
NCBI translation table: 2   RefSeq status: Reviewed
Link to publication    Link to GenBank entry

Method described in publication: Not described

nr	ARWEN		tRNAscan-SE		RefSeq annotation
1	16531	74	1	71	1	71
2	1018	1091	1019	1087	1019	1087
3	2647	2724	2647	2721	2647	2721
4	3678	3749	3679	3748	3679	3748
5	3746	3817	3746	3817	3746	3817
6	3818	3885	3818	3885	3818	3885
7	4928	4994	4928	4994	4928	4994
8	5002	5072	5003	5071	5003	5071
9	5073	5145	5073	5145	5073	5145
10	5178	5246			5179	5246
11	5246	5311	5246	5311	5247	5311
12	6864	6934	6865	6933	6865	6933
13	6936	7005	6937	7004	6937	7004
14	7736	7802	7736	7802	7736	7802
15	9428	9497	9429	9496	9429	9496
16	9842	9908	9843	9907	9843	9907
17	11576	11644	11576	11644	11576	11644
18					11645	11703
19	11704	11774	11704	11774	11704	11774
a	13047	13108
20	14107	14177	14108	14176	14108	14176
21	15321	15389	15322	15387	15322	15387
22	15390	15456	15390	15456	15390	15456

---

Test results for Trichoplax adhaerens
NCBI translation table: 4   RefSeq status: Reviewed
Link to publication    Link to GenBank entry

Method described in publication: tRNAs were identified with the aid of tRNAscan-SE

nr	ARWEN		tRNAscan-SE		RefSeq annotation
a	737	802
b	2491	2554
1	2964	3045	2966	3044	2966	3044
2	3108	3179	3108	3179	3108	3179
3	3319	3389	3319	3389	3319	3389
c	3457	3525
4	3685	3758	3686	3758	3686	3758
d	4760	4823
e	4897	4965
f	6088	6160
5	6163	6233	6163	6233	6163	6233
g	7196	7265
6	7560	7631	7560	7631	7560	7631
7	7873	7948	7874	7947	7874	7947
h	8542	8619
i	9426	9484
j	9666	9722
8	9804	9874	9804	9874	9804	9874
k	9991	10056
9	11043	11115	11044	11114	11044	11114
10	11221	11303	11221	11303	11221	11303
11	11416	11490	11417	11489	11417	11489
12	12052	12123	12052	12123	12052	12123
l	12906	12966
13	14056	14128	14056	14128	14056	14128
m	14163	14237
n	14277	14339
o			14286	14386
14	14588	14658	14587	14659	14587	14659
p	14671	14728
15	15328	15403	15329	15402	15329	15402
16	15459	15544	15459	15544	15459	15544
17	16176	16250	16177	16249	16177	16249
18	16249	16319	16249	16319	16249	16319
q	18912	18980
r	19181	19256
19	20611	20681	20611	20681	20611	20681
20	20712	20783	20712	20783	20712	20783
s	20926	21006
t	24240	24303
u	26608	26665
v	32270	32341	32270	32341
21	32700	32770	32700	32770	32700	32770
22	33838	33908	33838	33908	33838	33908
w	36308	36381
x	38844	38902
y	39181	39263