The FASTA files in this directory are the output files from the 
ContamFinder pipeline (Borner and Burmester 2017) for the transcriptomes sequenced in Galen et al. 2019 "Metatranscriptomics yields new genomic resources and sensitive detection of infections for diverse blood parasites". Each FASTA file contains all haemosporidian transcripts that were identified in each sample, including transcripts from multiple parasite species if the host was co-infected. Below is a list of each sample with the cytb lineages that are known to be present in the sample. Note that this does not include additional infections that were detected after analysis of the transcriptomes. See Appendix 1 in the associated Dryad repository (https://doi.org/10.5061/dryad.2646vp0) for the number of total haemosporidian infections that were identified in each sample.

Please contact Spencer Galen (spgalen@gmail.com) for questions about the transcriptome assemblies.

DOT23227 (PRS4407): SISKIN1, LOXLEU02, ROFI6 
DOT23232 (PRS4412): SISKIN1
DOT23233 (PRS4412): CB1, ROFI6
DOT23244 (PRS4424): TUMIG11, TURDUS2
DOT23258 (PRS4438): ZOLEU02, SPIARB01
DOT23268 (PRS4448): ROFI6, TRPIP2
DOT23273 (PRS4453): CNEORN01
DOT23276 (PRS4456): SISKIN1, ACAFLA03, TRPIP2
DOT23337 (SCG271): CNEORN01, SETPET04
DOT24378 (SCG296): VIOLI06
DOT24402 (SCG320): DUMCAR04, TUMIG03, SYAT05
DOT24420 (SCG338): VIOLI16
DOT24422 (SCG340): VIOLI11
DOT24449 (SCG367): DUMCAR01, PHEMEL02
DOT24451 (SCG369): CNEORN01, DUMCAR01, ICTLEU01, ICTGAL03
DOT24453 (SCG371): VIOLI11, CHIPAR01
DOT24461 (SCG379): DUMCAR01, MAFUS02
MSB:Bird:47757 (NK277457): CB1
MSB:Bird:47825 (NK277525): TABI10
MSB:Bird:47846 (NK277546): VIRPLU01, TROAED12
MSB:Bird:47847 (NK277547): PIRLUD03, PIRLUD04
MSB:Bird:48018 (NK277722): SIAMEX01
MSB:Bird:48026 (NK277730): TUMIG09, TROAED24
MSB:Bird:48045 (NK277749): VIRPLU01, VIRPLU04